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Patient journey and care pathway analysis

How patients move between states, where their trajectory changes and where follow-up is lost

What it is

We model the patient's trajectory as a sequence of clinical or behavioural states, such as diagnosis, treatment, adherence, progression or discharge, with transition probabilities between them. Instead of looking at a static snapshot of the population, we reconstruct how a cohort moves along its care pathway.

On that trajectory, we identify where attrition is concentrated, which transitions are critical and how long the cohort spends in each state.

Objectives

  • Reconstruct the real trajectory a cohort of patients follows between clinical or behavioural states, not the one the protocol assumes.
  • Quantify the transition probabilities between states and the expected time in each one.
  • Identify the critical transitions where the cohort deviates, changes course or drops out of follow-up.
  • Visualise the full flow of the trajectory to show where it is worth studying or designing an intervention.
Key points

State and transition models

  • Modelling of the trajectory as a process between discrete states, choosing the model family to suit the problem (e.g. multistate models, discrete- or continuous-time Markov chains, illness-death models).
  • Estimation of transition probabilities, transition intensities and the expected sojourn time in each state.
  • Inclusion of covariates to assess which factors are associated with each transition, not just the aggregate average.

Discovering the real trajectory

  • Reconstruction of the actual sequence of events from the activity log (e.g. sequence analysis, process mining on the event log).
  • Comparison of the observed trajectory with the one expected under the guideline or protocol, to locate where they diverge.
  • Identification of frequent path patterns and of the deviations worth analysing.

Flow visualisation and transition KPIs

  • Representation of the cohort's flow between states with Sankey diagrams and state occupation probability plots.
  • Trajectory-specific indicators: transition probability, time in state, attrition rate per transition, conditional length of stay.
  • A visual reading of where the cohort's losses are concentrated, legible to a clinical or management committee.

Trajectory prediction and critical transitions

  • Projection of how the cohort might evolve between states, when the temporal quality of the data and the stability of the process allow it, and over a justified horizon.
  • Identification of the transitions where an intervention could have the greatest impact on the rest of the path, according to the observed dynamics and the model's assumptions.
  • Estimation of the trajectory conditional on the patient's profile, with the uncertainty made explicit, when the data allow.

What it is for

  • Understand where a cohort really goes and where it is lost, instead of assuming it follows the intended path.
  • Show in which transition, not in which state, it is worth studying or designing an intervention to change the rest of the trajectory.
  • Anticipate how the cohort will be distributed across states in the future, to size follow-up, resources and care workload.
Why choose this service

A snapshot of each patient's state today doesn't tell you where they have been or where they are heading

Looking at the population as a snapshot hides the movement: how many patients pass from one state to another, in what order and with what probability. Without the transition dynamics, you cannot tell at which point on the path patients abandon treatment, progress or are lost to follow-up. Modelling the trajectory recovers that movement and makes it actionable.

The trajectory that happens, not the one assumed

The protocol's path and the real path rarely coincide. We reconstruct the actual sequence of states from your activity records and compare it with the expected trajectory, so that you see where practice departs from the plan, not an idealised version.

Where the cohort is lost, not just how much of it

Knowing that a percentage of patients drop out doesn't tell you at which point. We quantify the transition probabilities between states to locate the specific transition where attrition is concentrated: from referral to first visit, from discharge to follow-up, from starting treatment to sustained adherence.

The flow at a glance

A trajectory between states is easier to understand by seeing it than by reading it. We represent the cohort's flow with Sankey diagrams and state occupation curves, so that a clinical or management committee can spot the attrition without having to interpret a transition table.

Where it could go, not just where it has been

The past trajectory informs the future one. When the temporal quality of the data and the stability of the process allow it, we project how the cohort might be distributed across states over the horizon that matters for the decision, and estimate which transitions hold the most potential for change, to show where it is worth studying or designing an intervention.

Our process

What working with us looks like

We apply our D²I (Data to Insights) methodology to every service. A structured, iterative and transparent process that turns complex data into actionable knowledge.

01

Kick-off and problem definition

We meet with you to understand the clinical problem, the data available and the objectives of the project. We agree on deliverables, timelines and communication channels, and we sign whatever confidentiality agreements you need to protect your data.

02

Data review and preparation

We assess the quality of your data, identify inconsistencies and limitations, and structure the data for analysis. If critical information is missing, we tell you before going any further. We document every cleaning decision so that the process is traceable and reproducible. In this service, this includes defining the set of states and admissible transitions, reconstructing each patient's sequence of events from the activity log and cleaning the timing of the dates, on which the trajectory model depends entirely.

03

Analysis and modelling

We apply the statistical methodology that fits your questions. We work iteratively: we share preliminary results with you, discuss the findings and adjust the approach where needed. We do not work in the dark until the final delivery. For this service, we estimate transition probabilities and times with state models (multistate or Markov, depending on the problem), reconstruct the real trajectory through sequence analysis where appropriate, and represent the flow with Sankey diagrams and state occupation curves.

04

Communicating results

We turn the findings into the format you need: a technical report, tables and figures for publication, an interactive dashboard or an executive presentation. We always include the clinical interpretation, not just the figures.

05

Impact review session

30 days after delivery we meet with you again for a 60-minute strategy session. By then you have had time to present the results internally, the real implementation questions have come up and you can assess the impact of the work with some perspective. We answer your questions, adjust interpretations where necessary and agree together on the way forward.

This is our general process. If you want to understand how we apply it technically to each type of analysis, see our full D²I methodology.

Have a data project on your hands?

Tell us about your case and we will work out together how to approach it.

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FAQs

Frequently asked questions

When do I need to model the patient journey rather than rely on a snapshot of my patients' current state?

Patient journey analysis is needed when the question is where a cohort of patients moves and where it is lost, not just what state it is in today. It applies when you already know how many patients are in each situation but not in what order they move between them, with what probability, or at which point on the path they abandon treatment, progress or drop out of follow-up. A cross-sectional snapshot describes the present; the trajectory reconstructs movement between states over time. The difference is the one between knowing that a percentage of patients abandon treatment and knowing at which specific transition they do so. Locating that point is what turns an aggregate figure into a decision about where to intervene.

What data do I need to provide to reconstruct a cohort's trajectory?

You need an activity log with dated events per patient: an identifier, the milestones or states the patient passes through (diagnosis, visits, treatment, discharge, clinical events) and the date of each one. The client provides these records; the service defines the set of states and admissible transitions using your clinical judgement, reconstructs each patient's sequence and cleans the timing of the dates, on which the model depends entirely. The data do not need to arrive as an ordered sequence, but the events do need to be traceable over time and attributable to the same person or unit of follow-up. What determines the scope is temporal granularity: if the dates are imprecise or the states cannot be told apart in the data, the model stays at a coarser level.

What are multistate models and Markov chains, and when is each one used?

Multistate models and Markov models belong to the family of state and transition models, which represent a trajectory as a process between discrete states. They apply when you want to quantify how likely a patient is to move from one state to another and how long they stay in each one. A Markov model assumes that the transition depends only on the present state, not on the path taken so far. Multistate models are a broader framework that allows Markov, semi-Markov or non-Markov formulations and the effect of covariates on each transition, as well as structures such as the illness-death model. The choice depends on the problem, for example on whether prior history matters, whether time is continuous or discrete, or whether there are absorbing states, and it is justified explicitly rather than assumed by default. The Markov assumption is a simplification that is tested, not a property taken for granted.

What is sequence analysis or process mining applied to clinical trajectories, and how far does it go?

Sequence analysis and process mining reconstruct the trajectory a cohort actually followed from the event log, instead of starting from a theoretical path. They apply when you want to see actual practice, the real order of the steps, and compare it with the trajectory that a guideline or protocol expects, to locate where the two diverge. They make it possible to discover frequent paths, quantify how closely the cohort follows the expected path and detect the deviations worth analysing. The limit is an honest one: the method describes and compares observed trajectories; it does not by itself establish that a deviation causes a worse outcome, which requires a separate inference design. What it delivers is a map of how patients actually move through care, not a causal judgement on each deviation.

If I use Markov models, am I already doing an economic evaluation?

Patient journey analysis and HEOR can use the same technique, Markov models of health states, but they answer different questions depending on what the model is for. Patient journey analysis fits when the question is clinical or behavioural: where the cohort moves, at which transition it is lost and where to intervene. HEOR fits when the question is economic: whether an intervention offers value compared with its alternative, with the Markov model serving to calculate QALYs, DALYs and ICERs. The journey ends in a map of the trajectory and its critical transitions; HEOR ends in a cost-effectiveness ratio for a funding decision. The two can be combined, since the same state model can later feed an economic analysis, but one seeks to understand the patient's path and the other chooses between options by their value.

How does patient journey analysis differ from patient flow optimisation and capacity management?

Patient journey analysis and patient flow optimisation can share the same kind of state model, but they look at different subjects. Patient journey analysis looks at the patient's clinical or behavioural trajectory: how their disease progresses, how their adherence evolves, at which point in their care they are lost. Patient flow optimisation looks at the operational process of the system: capacity, bottlenecks, bed management and waiting times, with techniques such as queueing theory and discrete-event simulation. The distinction lies in the objective: the journey seeks to understand the patient and their path; patient flow, to optimise hospital operations. When the same admission–ward–discharge path is studied in terms of clinical outcomes, adherence or loss to follow-up, it belongs to patient journey analysis; when it is studied to size resources, it belongs to patient flow optimisation. If the decision is about care, it is the patient journey; if it is about capacity, it is patient flow.

Isn't this the same as stratifying patients or building a risk prediction model?

No: stratification, risk prediction and patient journey analysis answer three different questions about the same population. Patient stratification models give a static snapshot of which patient subgroups exist, using clustering and classification. Clinical risk and readmission prediction estimates an individual event: the probability that this particular patient will deteriorate or be readmitted. Patient journey analysis models the dynamics of the cohort across states: how it moves, in what order and with what probability it passes from one state to another over time. The difference is between a snapshot, an individual prognosis and the movement of the cohort. They complement each other naturally, since a stratification can define the starting states of a trajectory, but none of them replaces the others. If the question includes the words "when does it pass from one state to another?", it is patient journey analysis.

What exactly do you deliver, and who decides where to intervene?

You receive a map of the cohort's trajectory: the set of states and transitions, the estimated transition probabilities and times, a visualisation of the flow, usually with Sankey diagrams and state occupation curves, and the identification of the critical transitions where attrition is concentrated. The service reconstructs and models the trajectory and indicates where an intervention could have the greatest impact, according to the observed dynamics and the model's assumptions; the clinical or management decision on which intervention to apply, and where, is made by the client, with their knowledge of the context. You do not receive a closed intervention recommendation, but the quantitative evidence on the cohort's dynamics that supports that decision. The deliverable is legible to a clinical or management committee, not just to an analysis team.

Shall we talk?

Tell us what you are working on and we will give you a straight answer on how we can help.